JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XIRP2_chr2_166883480_167264753	0/0	c0032	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0033	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0034	10650	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0035	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0036	10650	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0037	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0038	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0039	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0040	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0041	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0042	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0043	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0044	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XKR3_chr22_16778480_16830411	0/0	c0001	1380	172	34	30	94	0	14	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0002	1380	128	33	13	65	4	13	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0003	1380	46	2	19	20	3	2	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0004	1380	29	8	5	9	0	7	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0005	1380	18	7	0	8	0	3	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0006	1380	10	3	1	5	1	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0007	1380	3	0	0	3	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0008	1380	2	0	0	2	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0010	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0011	1380	1	0	0	0	0	1	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0012	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0013	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0014	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0015	1380	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0016	1380	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0017	1380	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	c0018	1380	1	1	0	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR4_chr8_55097028_55547054	0/0	c0001	1953	176	72	32	52	8	12	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	c0002	1953	3	2	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	c0003	1953	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	c0004	1953	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	c0005	1953	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR5_chr8_6803517_6840524	0/0	c0001	2061	208	42	30	106	12	18	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	1/1	c0002	2061	175	7	33	112	4	17	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0003	2061	36	24	4	2	0	6	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0004	2061	7	7	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0005	2061	5	0	0	4	0	1	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0006	2061	4	4	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0007	2061	3	3	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0008	2061	2	0	2	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0009	2061	2	0	0	2	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0010	2061	2	0	0	0	0	2	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0011	2061	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0012	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0013	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0014	2061	1	0	0	0	1	0	copy fasta	XKR5	chr8	6803517	6840524