JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XKR5_chr8_6803517_6840524	0/0	c0015	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0016	2061	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0017	2061	1	0	0	0	1	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0018	2061	1	0	0	0	0	1	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0019	2061	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0020	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0021	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0022	2061	1	0	0	0	0	1	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0023	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0024	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0025	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0026	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0027	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0028	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0029	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0030	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0031	2061	1	0	0	1	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0032	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0033	2061	1	0	1	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0035	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR5_chr8_6803517_6840524	0/0	c0036	2061	1	1	0	0	0	0	copy fasta	XKR5	chr8	6803517	6840524
XKR6_chr8_10891045_11206833	0/0	c0001	1926	176	90	40	8	10	28	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	c0002	1926	2	0	2	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR7_chr20_31963151_32008387	1/1	c0001	1740	264	69	65	83	11	34	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	c0002	1740	13	11	2	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	c0003	1740	12	10	2	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	c0004	1740	10	3	3	1	1	2	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	c0005	1740	3	3	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	c0006	1740	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR8_chr1_27954973_27973093	1/1	c0001	1188	435	93	79	197	18	46	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0002	1188	2	0	0	2	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0003	1188	1	0	0	0	0	1	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0004	1188	1	0	0	0	0	1	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0005	1188	1	0	1	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR9_chr8_70664339_70740942	1/0	c0001	1122	212	54	37	98	5	17	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/1	c0002	1122	86	22	19	31	4	9	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0003	1122	7	0	0	7	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0004	1122	5	5	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0005	1122	4	0	1	0	1	2	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0006	1122	4	4	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0007	1122	2	0	0	2	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0008	1122	1	0	1	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	c0009	1122	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKRX_chrX_100908445_100933917	1/1	c0001	1350	288	72	50	123	11	30	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0002	1350	3	3	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0003	1350	1	1	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0004	1349	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917