JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XKRX_chrX_100908445_100933917	0/0	c0005	1352	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0006	1348	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0007	1350	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	c0008	1350	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XK_chrX_37680791_37737130	1/1	c0001	1335	210	59	37	80	5	27	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	c0002	1335	7	7	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	c0003	1335	2	2	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XNDC1N_chr11_71875704_71933594	1/1	c0001	705	305	71	61	136	8	27	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0002	705	10	0	2	2	0	6	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0003	706	9	8	1	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0004	706	7	7	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0005	705	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0006	705	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0007	705	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0008	706	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0009	705	1	0	0	0	0	1	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	c0010	706	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XPA_chr9_97669909_97702340	1/1	c0001	822	405	82	78	185	14	44	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	c0002	822	5	5	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	c0003	822	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	c0004	822	1	0	0	1	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	c0005	822	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	c0006	822	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPC_chr3_14140147_14183601	0/0	c0001	2823	96	14	21	49	4	8	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0002	2823	91	12	14	56	5	4	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/1	c0003	2823	79	36	21	4	4	13	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0004	2823	44	0	10	34	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0005	2823	25	10	3	4	0	8	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0006	2823	6	6	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0007	2823	4	4	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0008	2823	4	0	3	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0009	2823	3	3	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0010	2823	2	0	0	2	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0011	2823	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0012	2823	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0013	2823	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0014	2823	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0015	2823	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0016	2823	1	0	1	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0017	2823	1	0	1	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0018	2823	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	1/0	c0019	2823	1	0	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0020	2823	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0021	2823	1	0	0	0	1	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0022	2823	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0023	2823	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0024	2823	1	0	0	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0025	2823	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	c0026	2823	1	0	0	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPNPEP1_chr10_109859766_109928511	1/1	c0001	2001	333	86	58	145	10	32	copy fasta	XPNPEP1	chr10	109859766	109928511