JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XPNPEP1_chr10_109859766_109928511	0/0	c0002	2001	2	2	0	0	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0003	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0004	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0005	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0006	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0007	2001	1	1	0	0	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0008	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0009	2001	1	1	0	0	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0010	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	c0011	2001	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP2_chrX_129733979_129774536	0/0	c0001	2025	189	68	17	89	2	13	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	1/1	c0002	2025	85	5	31	27	6	14	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0003	2025	3	2	1	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0004	2025	3	0	0	2	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0005	2025	2	2	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0006	2025	2	0	0	0	1	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0007	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0008	2027	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0009	2025	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0010	2025	1	0	1	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0011	2022	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0012	2027	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0013	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0014	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0015	2026	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0016	2027	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0017	2025	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0018	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0019	2027	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0020	2025	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0021	2028	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0022	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0023	1993	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0024	2025	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0025	2024	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0026	2026	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0027	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0028	2024	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0029	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0030	2026	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0031	2025	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	c0032	2029	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP3_chr22_40852148_40937815	1/1	c0001	1524	241	77	40	84	10	28	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	c0002	1524	4	4	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	c0003	1524	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	c0004	1524	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	c0005	1524	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPO1_chr2_61472849_61543356	1/1	c0001	3216	285	61	56	128	12	26	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	c0002	3216	11	10	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	c0003	3216	11	0	3	8	0	0	copy fasta	XPO1	chr2	61472849	61543356