JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XPO1_chr2_61472849_61543356	0/0	c0004	3216	7	7	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	c0005	3216	4	4	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO4_chr13_20772329_20907746	1/1	c0001	3456	242	72	50	80	10	28	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0002	3456	21	1	5	0	5	10	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0003	3456	14	13	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0004	3456	4	0	0	4	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0005	3456	4	3	0	0	1	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0006	3456	3	0	3	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0007	3456	2	2	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0008	3456	1	0	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	c0009	3456	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO5_chr6_43517334_43581038	0/0	c0001	3615	87	49	14	9	3	12	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/1	c0002	3615	64	8	13	35	1	6	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	1/0	c0003	3615	58	10	8	28	4	7	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0004	3615	9	9	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0005	3615	8	8	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0006	3615	5	0	4	0	0	1	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0007	3615	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0008	3615	2	0	2	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0009	3615	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0010	3615	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0011	3615	1	0	1	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0012	3615	1	0	0	0	0	1	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0013	3615	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0014	3615	1	0	0	0	0	1	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0015	3615	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0016	3615	1	0	1	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0017	3615	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	c0018	3615	1	0	1	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO6_chr16_28092976_28216965	1/1	c0001	3378	184	59	27	71	7	18	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0002	3378	48	7	16	14	7	4	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0003	3378	45	1	7	31	0	6	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0004	3378	10	10	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0005	3378	9	8	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0006	3378	3	3	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0007	3378	3	0	0	3	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0008	3378	1	0	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0009	3378	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0010	3378	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0011	3378	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0012	3378	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	c0013	3378	1	0	0	1	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO7_chr8_21914662_22011585	1/0	c0001	3264	116	18	28	54	2	13	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0002	3264	109	50	11	36	0	12	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/1	c0003	3264	86	14	16	45	4	6	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0004	3264	15	1	8	0	6	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0005	3264	4	1	0	2	0	1	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0006	3264	2	2	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0007	3264	2	0	0	2	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0008	3264	2	0	0	2	0	0	copy fasta	XPO7	chr8	21914662	22011585