JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XPO7_chr8_21914662_22011585	0/0	c0009	3264	2	0	0	2	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0010	3264	1	0	0	1	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0011	3264	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0012	3264	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	c0013	3264	1	0	1	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPOT_chr12_64399392_64456125	1/1	c0001	2889	377	89	50	184	12	40	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	c0002	2889	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	c0003	2889	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	c0004	2889	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	c0005	2889	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	c0006	2889	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPR1_chr1_180627022_180895279	1/1	c0001	2091	310	73	62	131	12	30	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	c0002	2091	17	15	2	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	c0003	2091	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	c0004	2091	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	c0005	2091	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XRCC1_chr19_43538311_43580527	0/0	c0001	1902	114	30	17	54	6	7	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0002	1902	90	9	14	45	5	17	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/1	c0003	1902	78	19	19	22	6	11	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0004	1902	75	5	12	51	0	7	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0005	1902	23	2	1	16	1	3	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0006	1902	9	8	1	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0007	1902	8	8	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0008	1902	7	1	5	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0009	1902	6	4	2	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0010	1902	6	6	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0011	1902	2	0	0	2	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0012	1902	1	0	1	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0013	1902	1	0	0	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0014	1902	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	1/0	c0015	1902	1	0	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0016	1902	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0017	1902	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0018	1902	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0019	1902	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0020	1902	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	c0021	1902	1	0	0	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC2_chr7_152639776_152681141	1/1	c0001	843	380	88	74	174	7	35	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	c0002	843	12	0	4	0	1	7	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	c0003	843	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	c0004	843	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC3_chr14_103692617_103720451	1/0	c0001	1041	312	60	57	151	8	35	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/1	c0002	1041	70	19	18	15	6	11	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0003	1041	5	0	0	5	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0004	1041	3	3	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0009	1041	1	0	1	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451