JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XRCC3_chr14_103692617_103720451	0/0	c0010	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0011	1041	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0012	1041	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0013	1041	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	c0014	1041	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC4_chr5_83072547_83358760	0/1	c0001	1005	120	31	18	58	1	11	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	1/0	c0002	1005	114	44	23	28	2	16	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0003	1005	13	0	0	11	1	1	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0004	1005	5	0	0	5	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0005	1005	3	1	2	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0006	1005	2	2	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0007	1005	2	2	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0008	1005	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0009	1005	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	c0010	1005	1	0	1	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC5_chr2_216104348_216211293	0/1	c0001	2199	305	85	58	115	14	32	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	1/0	c0002	2199	42	10	6	15	0	10	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	c0003	2199	1	1	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	c0004	2199	1	0	0	1	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	c0005	2199	1	0	1	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	c0006	2199	1	0	1	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	c0007	2199	1	0	0	1	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC6_chr22_41616295_41669041	1/1	c0001	1830	269	86	50	97	9	25	copy fasta	XRCC6	chr22	41616295	41669041
XRCC6_chr22_41616295_41669041	0/0	c0002	1830	54	2	12	24	5	11	copy fasta	XRCC6	chr22	41616295	41669041
XRCC6_chr22_41616295_41669041	0/0	c0003	1830	1	0	0	1	0	0	copy fasta	XRCC6	chr22	41616295	41669041
XRN1_chr3_142301610_142453037	1/1	c0001	5085	245	60	48	102	11	22	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0002	5085	37	4	7	19	3	4	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0003	5085	8	0	0	8	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0004	5085	6	5	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0005	5085	5	0	0	5	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0006	5085	5	5	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0007	5085	2	0	0	2	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0008	5085	2	2	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0009	5085	2	1	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0010	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0011	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0012	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0013	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0014	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0015	5085	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0016	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0017	5085	1	0	0	0	0	1	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0018	5085	1	0	0	0	0	1	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0019	5085	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0020	5085	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	c0021	5085	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN2_chr20_21298331_21394825	1/1	c0001	2853	257	68	44	105	14	24	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	c0002	2853	16	15	1	0	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	c0003	2853	2	2	0	0	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	c0004	2853	1	1	0	0	0	0	copy fasta	XRN2	chr20	21298331	21394825