JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XRN2_chr20_21298331_21394825	0/0	c0005	2853	1	0	0	1	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	c0006	2853	1	0	1	0	0	0	copy fasta	XRN2	chr20	21298331	21394825
XRRA1_chr11_74835910_74954091	1/0	c0001	2403	209	46	37	85	10	30	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/1	c0002	2403	86	6	17	54	3	5	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0003	2403	8	8	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0004	2403	7	7	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0005	2403	7	7	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0006	2403	5	5	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0007	2403	4	4	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0008	2403	3	3	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0009	2403	2	2	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0010	2403	2	2	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0011	2403	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0012	2403	1	0	0	0	1	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0013	2403	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0014	2403	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0015	2403	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0016	2403	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0017	2403	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0018	2403	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0019	2403	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0020	2403	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0021	2403	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0022	2403	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	c0023	2403	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XXYLT1_chr3_195063284_195276159	1/1	c0001	1182	186	71	32	53	4	24	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	c0002	1182	6	0	1	5	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	c0003	1182	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	c0004	1182	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	c0006	1182	1	0	1	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XYLB_chr3_38341785_38419985	0/1	c0001	1611	225	54	46	90	6	28	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0002	1611	79	6	16	43	4	10	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0003	1611	17	10	4	0	0	3	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0004	1611	7	7	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0005	1611	7	5	2	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0006	1611	5	5	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0007	1611	3	0	0	3	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0008	1611	3	1	2	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	1/0	c0009	1611	3	1	1	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0010	1611	2	1	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0011	1611	2	2	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0012	1611	1	0	0	0	0	1	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0013	1611	1	0	1	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0014	1611	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0015	1611	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	c0016	1611	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLT1_chr16_17096769_17475960	1/0	c0001	2880	45	6	17	9	5	7	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0002	2880	12	1	8	1	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0003	2880	10	1	7	0	0	2	copy fasta	XYLT1	chr16	17096769	17475960