JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XYLT1_chr16_17096769_17475960	0/0	c0004	2880	9	9	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0005	2880	7	5	0	0	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0006	2880	6	6	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0007	2880	5	5	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/1	c0008	2880	5	3	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0009	2880	4	4	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0010	2880	4	4	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0011	2880	4	3	0	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0012	2880	4	3	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0013	2880	2	0	0	0	2	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0014	2880	2	0	0	0	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0015	2880	2	0	1	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0016	2880	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0017	2880	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0018	2880	2	1	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0019	2880	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0020	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0021	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0022	2880	1	0	0	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0023	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0024	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0025	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0026	2880	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0027	2880	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0028	2880	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0029	2880	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0030	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0031	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0032	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0033	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0034	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0035	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0036	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0037	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0038	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0039	2880	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0040	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0041	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0042	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0043	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0044	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0045	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	c0046	2880	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT2_chr17_50341126_50366185	1/0	c0001	2598	102	21	4	56	1	19	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/1	c0002	2598	72	18	19	19	4	11	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0003	2598	58	17	20	4	6	11	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0004	2598	50	1	22	21	4	2	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0005	2598	18	18	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0006	2598	13	0	0	13	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0007	2598	9	6	3	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185