JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XYLT2_chr17_50341126_50366185	0/0	c0008	2598	7	0	7	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0009	2598	6	5	1	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0010	2598	6	0	0	6	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0011	2598	2	0	2	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0012	2598	2	2	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0013	2598	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0014	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0015	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0016	2598	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0017	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0018	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0019	2598	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0020	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0021	2598	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0022	2598	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0023	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0024	2598	1	0	0	0	1	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0025	2598	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0026	2598	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	c0027	2598	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
YAE1_chr7_39561404_39577881	1/0	c0001	681	352	55	70	168	18	40	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	c0002	681	71	25	6	34	0	6	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	c0003	681	14	12	2	0	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/1	c0004	681	5	4	0	0	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	c0005	681	5	0	0	5	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	c0006	681	3	0	0	3	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAF2_chr12_42152104_42243248	1/1	c0001	543	231	57	46	98	8	20	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	c0002	543	136	24	22	70	4	16	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	c0003	543	5	5	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	c0004	543	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	c0005	543	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAP1_chr11_102105447_102238424	1/1	c0001	1515	318	86	63	132	7	28	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	c0002	1515	1	0	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	c0003	1515	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	c0004	1515	1	0	0	0	1	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	c0005	1515	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YARS1_chr1_32770239_32822358	1/1	c0001	1587	301	73	47	127	15	37	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0002	1587	21	7	9	0	1	4	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0003	1587	2	0	0	2	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0004	1587	2	2	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0005	1587	2	0	2	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0006	1587	1	0	0	0	0	1	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0007	1587	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0008	1587	1	0	0	1	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	c0009	1587	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS2_chr12_32741544_32760897	1/1	c0001	1434	325	66	73	137	11	36	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0002	1434	49	19	9	14	2	5	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0003	1434	7	7	0	0	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0004	1434	4	0	0	1	0	3	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0005	1434	3	3	0	0	0	0	copy fasta	YARS2	chr12	32741544	32760897