JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YARS2_chr12_32741544_32760897	0/0	c0006	1434	2	0	0	2	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0007	1434	1	0	0	1	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0008	1434	1	0	0	1	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	c0010	1434	1	0	0	0	1	0	copy fasta	YARS2	chr12	32741544	32760897
YBEY_chr21_46281342_46302751	1/1	c0001	504	397	96	73	166	17	43	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	c0002	504	4	0	3	0	1	0	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	c0003	504	1	1	0	0	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	c0004	504	1	0	0	0	0	1	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	c0005	504	1	1	0	0	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBX1_chr1_42677418_42708805	1/1	c0001	975	394	84	69	181	14	44	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	c0002	976	7	2	2	3	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	c0003	975	1	0	1	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX2_chr17_7283263_7299639	0/0	c0001	1095	173	55	14	91	4	9	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0002	1095	138	24	42	43	11	18	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	1/1	c0003	1095	102	9	17	55	3	16	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0004	1095	14	2	6	6	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0005	1095	2	1	0	0	0	1	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0006	1095	2	0	0	2	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0009	1092	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0011	1095	1	0	1	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0012	1077	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0013	1095	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0014	1095	1	1	0	0	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	c0015	1095	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX3_chr12_10694089_10728323	1/1	c0001	1119	241	54	51	96	16	22	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0002	1119	94	4	6	72	0	12	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0003	1119	43	8	8	20	2	5	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0004	1122	17	17	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0005	1119	13	1	5	7	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0006	1119	8	0	0	5	0	3	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0007	1119	5	1	2	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0008	1119	4	3	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0009	1119	2	2	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0010	1119	2	0	0	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0011	1119	2	0	2	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0012	1119	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0013	1119	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0014	1119	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0015	1119	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0016	1119	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0017	1119	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	c0018	1119	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YDJC_chr22_21623089_21635022	1/1	c0001	972	212	51	43	86	9	21	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0002	972	106	3	17	73	3	10	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0003	972	76	27	10	24	2	13	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0004	972	11	10	1	0	0	0	copy fasta	YDJC	chr22	21623089	21635022