JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRAT1_chr7_2532810_2560524	0/0	c0026	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0027	2466	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0028	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0029	2466	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0030	2466	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0031	2466	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0032	2466	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0033	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0034	2466	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	c0035	2466	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRCA1_chr17_43039295_43130364	0/1	c0001	5592	95	20	13	48	2	11	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	1/0	c0002	5592	79	10	15	38	5	10	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0003	5592	55	49	4	0	0	2	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0004	5592	9	0	5	0	1	3	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0005	5592	6	0	1	5	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0006	5592	6	0	5	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0007	5592	2	0	0	2	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0008	5592	2	0	0	0	1	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0009	5592	2	2	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0010	5592	2	2	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0011	5592	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0012	5592	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0013	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0014	5592	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0015	5592	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0016	5592	1	0	0	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0017	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0018	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0019	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0020	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0021	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0022	5592	1	0	0	0	1	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0023	5592	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0024	5592	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0025	5592	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0026	5592	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0027	5592	1	0	0	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	c0028	5561	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA2_chr13_32310508_32405268	0/0	c0001	10257	90	16	8	56	2	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/1	c0002	10257	71	3	13	39	4	11	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0003	10257	55	17	20	8	2	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0004	10257	46	6	6	27	2	5	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0005	10257	37	1	6	21	1	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0006	10257	10	3	5	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	1/0	c0007	10257	7	5	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0008	10257	7	0	0	7	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0009	10257	7	0	6	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0010	10257	6	1	2	0	1	2	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0011	10257	4	4	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0012	10257	4	4	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268