JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YDJC_chr22_21623089_21635022	0/0	c0005	972	5	4	1	0	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0006	972	3	3	0	0	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0007	972	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0008	972	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0009	972	1	0	0	0	0	1	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0010	972	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0011	972	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0012	972	1	0	0	0	0	1	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	c0013	972	1	0	0	1	0	0	copy fasta	YDJC	chr22	21623089	21635022
YEATS2_chr3_183692797_183817624	0/1	c0001	4266	102	22	20	46	6	7	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0002	4269	62	15	18	26	1	2	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	1/0	c0003	4269	55	16	15	10	4	9	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0004	4269	20	0	0	18	0	2	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0005	4266	11	0	5	6	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0006	4269	6	1	3	0	1	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0007	4269	5	4	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0008	4269	4	3	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0009	4266	4	0	0	4	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0010	4272	4	4	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0011	4269	4	4	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0012	4270	4	0	1	3	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0013	4267	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0014	4270	2	0	2	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0015	4269	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0016	4269	2	0	0	0	2	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0017	4266	2	1	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0018	4269	2	0	0	2	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0019	4269	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0020	4266	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0021	4266	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0022	4266	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0023	4270	1	0	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0024	4269	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0025	4266	1	0	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0026	4266	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0027	4266	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0028	4272	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0029	4266	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0030	4266	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0031	4267	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0032	4269	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0033	4269	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0034	4269	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	c0035	4266	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS4_chr12_69354743_69395870	1/1	c0001	684	386	79	64	184	14	43	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	c0002	684	17	11	4	0	2	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	c0003	684	1	0	0	0	0	1	copy fasta	YEATS4	chr12	69354743	69395870
YES1_chr18_716588_817242	0/1	c0001	1632	364	87	63	163	10	40	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	1/0	c0002	1632	4	2	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	c0003	1632	4	0	1	3	0	0	copy fasta	YES1	chr18	716588	817242