JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YES1_chr18_716588_817242	0/0	c0004	1632	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	c0005	1632	1	0	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	c0007	1632	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YIF1A_chr11_66279580_66294143	1/1	c0001	882	425	92	77	199	15	40	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0002	882	5	0	0	5	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0003	882	2	0	0	2	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0004	882	2	0	1	0	1	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0005	882	1	0	0	0	0	1	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0006	882	1	0	0	0	0	1	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0007	882	1	1	0	0	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	c0008	882	1	1	0	0	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1B_chr19_38298558_38320947	1/1	c0001	945	188	57	34	63	13	19	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0002	945	100	14	27	43	2	14	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0003	945	58	5	9	38	1	5	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0004	945	25	4	2	18	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0005	945	8	0	0	8	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0006	945	5	5	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0007	946	5	0	1	3	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0008	945	4	0	0	4	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0009	946	2	0	0	2	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0010	946	2	0	0	2	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0011	945	1	0	1	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0012	945	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0013	945	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0014	945	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	c0015	945	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIPF1_chr1_53846733_53894797	1/1	c0001	921	357	83	72	138	18	44	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	c0002	921	1	0	0	1	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	c0003	921	1	0	0	1	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	c0004	921	1	1	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF2_chr19_10917193_10933639	1/1	c0001	951	318	85	58	113	13	47	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0002	951	78	0	6	72	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0003	951	9	0	8	0	1	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0004	951	3	0	0	3	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0005	951	2	2	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0006	951	2	2	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0007	951	1	0	0	0	0	1	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0008	951	1	0	1	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0009	951	1	0	1	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0010	951	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0011	951	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	c0012	951	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF3_chr6_43506832_43521926	1/1	c0001	1053	356	83	71	148	14	38	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0002	1053	11	4	1	1	2	3	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0003	1053	11	11	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0004	1053	2	0	0	2	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0005	1053	2	0	0	2	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	YIPF3	chr6	43506832	43521926