JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YIPF3_chr6_43506832_43521926	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	c0009	1053	1	0	0	0	0	1	copy fasta	YIPF3	chr6	43506832	43521926
YIPF4_chr2_32272904_32321594	1/1	c0001	735	393	93	74	174	14	36	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	c0002	735	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	c0003	735	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	c0004	735	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	c0005	735	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF5_chr5_144153162_144175659	1/1	c0001	774	434	93	71	206	18	44	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	c0002	774	2	2	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	c0003	774	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	c0004	774	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	c0005	774	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	c0006	774	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF6_chrX_68494051_68542282	1/1	c0001	711	225	57	37	100	9	20	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	c0002	711	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	c0003	710	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF7_chr4_44617088_44656625	0/1	c0001	771	176	61	23	64	3	24	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	1/0	c0002	771	146	26	34	59	12	14	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0003	771	76	3	17	53	1	2	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0004	771	7	0	0	7	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0005	771	2	0	0	2	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0006	771	1	0	0	1	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0007	771	1	1	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	c0008	771	1	1	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YJEFN3_chr19_19523911_19542581	1/1	c0001	900	325	86	62	113	17	45	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0002	900	4	0	0	4	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0003	900	3	3	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0004	900	2	2	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0005	900	2	0	2	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0006	900	1	1	0	0	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0007	900	1	0	0	0	0	1	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0008	900	1	0	0	0	1	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	c0009	900	1	0	0	1	0	0	copy fasta	YJEFN3	chr19	19523911	19542581
YJU2B_chr19_13742895_13768289	1/1	c0001	1191	385	61	75	192	15	40	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0002	1191	16	16	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0003	1191	12	12	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0004	1191	7	6	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0005	1191	2	1	0	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0007	1191	1	0	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0009	1191	1	0	0	0	0	1	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0010	1191	1	0	0	0	0	1	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0011	1191	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0012	1191	1	0	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0013	1214	1	0	0	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	c0015	1191	1	0	0	0	1	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2_chr19_4242080_4274088	1/1	c0001	972	202	30	39	100	5	26	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0002	972	155	42	19	72	5	17	copy fasta	YJU2	chr19	4242080	4274088