JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YJU2_chr19_4242080_4274088	0/0	c0003	972	11	11	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0004	972	5	4	1	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0005	972	3	3	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0006	972	2	2	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0007	961	1	0	0	1	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0008	972	1	1	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0009	972	1	0	1	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0010	972	1	0	0	1	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0011	972	1	1	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	c0012	972	1	0	0	0	0	1	copy fasta	YJU2	chr19	4242080	4274088
YKT6_chr7_44195978_44219294	1/1	c0001	597	417	94	76	190	16	39	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	c0002	597	1	0	0	0	0	1	copy fasta	YKT6	chr7	44195978	44219294
YLPM1_chr14_74758316_74842318	0/0	c0001	6441	108	20	14	64	1	9	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	1/0	c0002	6441	81	22	15	36	3	4	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0003	6441	75	14	11	37	1	12	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0004	6441	27	12	9	6	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/1	c0005	6441	6	0	3	0	2	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0006	6441	5	1	2	0	1	1	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0007	6441	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0008	6441	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0009	6441	4	3	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0010	6441	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0011	6441	4	0	2	0	1	1	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0012	6441	2	0	2	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0013	6441	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0014	6441	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0015	6441	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0016	6441	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0017	6441	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0018	6441	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0019	6441	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0020	6441	1	0	0	0	1	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0021	6441	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0022	6441	1	0	0	0	0	1	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0023	6441	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	c0024	6441	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YME1L1_chr10_27105111_27159384	1/1	c0001	2151	202	52	64	58	7	19	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0002	2151	112	26	3	73	4	6	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0003	2151	64	2	7	47	1	7	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0004	2151	5	3	2	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0005	2151	2	2	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0006	2151	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0007	2151	1	0	0	1	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	c0008	2151	1	0	0	1	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YOD1_chr1_207038849_207056208	1/1	c0001	1047	372	95	76	148	18	33	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0002	1047	20	0	1	17	0	2	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0003	1047	3	3	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0004	1047	2	2	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0005	1047	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0006	1047	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208