JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YOD1_chr1_207038849_207056208	0/0	c0007	1047	1	0	0	0	0	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YPEL1_chr22_21692536_21740794	1/1	c0001	360	372	92	66	162	12	38	copy fasta	YPEL1	chr22	21692536	21740794
YPEL2_chr17_59326655_59406729	1/1	c0001	360	344	86	62	146	10	38	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	c0002	360	6	4	2	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL3_chr16_30087314_30101213	1/1	c0001	474	376	80	69	169	10	46	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	c0002	474	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	c0003	474	1	0	1	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL4_chr11_57640087_57654912	0/0	c0000	0	1	0	0	0	0	1	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	1/1	c0001	384	327	96	70	106	14	39	copy fasta	YPEL4	chr11	57640087	57654912
YPEL5_chr2_30142007_30165533	0/1	c0001	366	210	29	23	130	4	23	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	1/0	c0002	366	193	62	43	56	10	21	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	c0003	366	1	1	0	0	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YRDC_chr1_37797945_37813208	1/1	c0001	840	409	82	74	196	13	42	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	c0002	840	2	2	0	0	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	c0003	840	2	0	0	2	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	c0004	840	1	0	0	0	1	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	c0005	840	1	0	0	1	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	c0006	840	1	0	0	1	0	0	copy fasta	YRDC	chr1	37797945	37813208
YTHDC1_chr4_68305387_68355090	0/1	c0001	2184	334	84	63	134	16	36	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0002	2184	47	0	4	42	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0003	2184	2	2	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0004	2184	1	0	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0005	2184	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0006	2199	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	c0007	2184	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC2_chr5_113508694_113600284	1/0	c0001	4293	100	2	21	57	7	12	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0002	4293	57	19	12	23	0	3	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0003	4293	35	15	6	10	2	2	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/1	c0004	4293	27	2	4	15	1	4	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0005	4293	21	0	2	9	2	8	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0006	4293	16	2	0	13	0	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0007	4293	15	9	5	0	1	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0008	4293	12	10	2	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0009	4293	7	0	5	0	1	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0010	4293	4	4	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0011	4293	4	4	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0012	4293	2	2	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0013	4293	2	2	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0014	4293	2	2	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0015	4293	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0016	4293	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0017	4293	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0018	4293	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0019	4293	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0020	4293	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0021	4293	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0022	4293	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0023	4293	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284