JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YTHDC2_chr5_113508694_113600284	0/0	c0024	4293	1	0	0	0	0	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0025	4293	1	0	1	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	c0026	4293	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDF1_chr20_63190429_63221131	1/0	c0001	1680	236	50	43	99	12	31	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0002	1680	113	32	13	55	4	9	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/1	c0003	1680	9	0	2	0	2	4	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0004	1680	5	5	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0005	1680	3	0	0	0	0	3	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0006	1680	3	3	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0007	1680	2	0	0	2	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0008	1680	1	0	0	0	0	1	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0009	1680	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0010	1680	1	0	1	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0011	1680	1	0	1	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0012	1680	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0013	1680	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	c0014	1680	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF2_chr1_28731940_28774775	1/1	c0001	1740	285	87	69	87	12	28	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	c0002	1740	4	4	0	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	c0003	1740	1	0	1	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	c0004	1740	1	1	0	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	c0005	1740	1	0	0	1	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF3_chr8_63163621_63217786	1/1	c0001	1758	369	83	66	175	11	32	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	c0002	1758	3	1	0	0	1	1	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	c0003	1758	1	0	0	1	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	c0004	1758	1	0	0	0	0	1	copy fasta	YTHDF3	chr8	63163621	63217786
YWHAB_chr20_44880705_44913532	1/1	c0001	741	268	44	64	119	10	29	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	c0002	741	92	39	13	26	5	9	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	c0003	741	1	0	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	c0004	741	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	c0005	741	1	0	0	0	1	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	c0006	741	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAE_chr17_1339275_1405222	0/1	c0001	768	363	94	74	138	14	42	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	c0002	768	6	0	2	0	2	2	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	c0003	768	3	0	0	3	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	c0004	768	1	0	0	1	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAG_chr7_76321799_76363991	1/1	c0001	744	245	65	47	99	7	25	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0002	744	133	26	15	73	5	14	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0003	744	2	2	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0004	744	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0005	744	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0006	744	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	c0007	744	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAH_chr22_31939535_31962603	1/1	c0001	741	408	92	78	178	14	44	copy fasta	YWHAH	chr22	31939535	31962603
YWHAQ_chr2_9578967_9635997	1/1	c0001	738	272	96	64	64	16	30	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAZ_chr8_100911523_100957020	1/1	c0001	738	386	92	71	162	15	44	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	c0002	738	3	0	2	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	c0003	738	2	0	0	2	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	c0004	738	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YY1AP1_chr1_155654454_155693774	1/1	c0001	2253	231	47	41	99	11	31	copy fasta	YY1AP1	chr1	155654454	155693774