JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
YY1AP1_chr1_155654454_155693774	0/0	c0002	2253	20	20	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0003	2253	10	10	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0004	2253	3	0	3	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0005	2253	3	3	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0006	2253	2	0	0	2	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0007	2253	2	2	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0008	2253	1	0	0	1	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0009	2253	1	0	0	0	1	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0010	2253	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0011	2253	1	0	0	0	0	1	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0012	2253	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0013	2253	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	c0014	2253	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1_chr14_100234144_100287788	1/1	c0001	1245	343	88	71	134	12	36	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	c0002	1245	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	c0003	1245	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	c0004	1227	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	c0005	1245	1	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY2_chrX_21850987_21863740	1/1	c0001	1119	322	75	50	154	11	30	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	c0002	1119	1	0	0	0	0	1	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	c0003	1119	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
ZACN_chr17_76074182_76087806	0/1	c0001	1239	160	25	29	76	7	22	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	1/0	c0002	1239	98	23	20	46	3	5	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0003	1239	86	9	16	52	4	5	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0004	1239	33	28	5	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0005	1239	3	3	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0006	1239	2	2	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0007	1239	2	0	1	0	1	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0008	1239	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0012	1239	1	0	0	0	1	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0013	1239	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0014	1239	1	0	0	1	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	c0015	1239	1	0	1	0	0	0	copy fasta	ZACN	chr17	76074182	76087806
ZAN_chr7_100728595_100802797	0/0	c0001	8439	42	1	2	36	1	2	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0002	7673	32	8	6	13	3	2	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0003	8403	23	1	11	3	3	5	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0004	8439	21	0	1	18	0	2	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0005	8442	11	0	1	6	0	4	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0006	8439	9	0	7	2	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0007	8438	9	1	3	5	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0008	8439	8	0	6	0	2	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0009	8439	6	0	0	0	0	6	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0010	8442	4	0	0	4	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0011	8438	4	4	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/1	c0012	8403	3	0	1	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0013	8438	3	2	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0014	8438	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797