JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZAN_chr7_100728595_100802797	0/0	c0015	8439	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0016	8438	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0017	8438	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0018	8438	3	0	0	3	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0019	8438	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0020	8403	3	0	0	0	0	3	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0021	8403	3	0	3	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0022	7652	3	3	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0023	8312	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0024	8312	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0025	8313	2	0	0	2	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0026	8439	2	0	0	2	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0027	8439	2	0	0	2	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0028	8439	2	0	0	0	0	2	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0029	8435	2	0	2	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0030	8438	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0031	8403	2	0	1	0	1	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0032	8438	2	0	1	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0033	8403	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0034	8435	2	0	0	0	1	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0035	8438	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0036	8439	2	0	0	2	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0037	8442	2	0	0	1	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0038	7511	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0039	7672	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0040	7637	2	2	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0041	8403	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0042	8403	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0043	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0044	8442	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0045	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0046	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0047	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0048	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0049	8403	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0050	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0051	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0052	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0053	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0054	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0055	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0056	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0057	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0058	8439	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0059	8277	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0060	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0061	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0062	8442	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0063	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0064	8439	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797