JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZAN_chr7_100728595_100802797	0/0	c0065	8403	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0066	8439	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0067	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0068	8438	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0069	8439	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0070	8438	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0071	8438	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0072	8403	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0073	8439	1	0	0	0	1	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0074	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0075	8442	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0076	8403	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0077	8438	1	0	1	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0078	8403	1	0	0	0	1	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	1/0	c0079	8439	1	0	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0080	8438	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0081	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0082	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0083	8403	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0084	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0085	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0086	8439	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0087	8439	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0088	8403	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0089	8438	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0090	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0091	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0092	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0093	8438	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0094	8438	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0095	8439	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0096	8438	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0097	8442	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0098	8442	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0099	8439	1	0	0	0	0	1	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0100	8403	1	0	0	0	1	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0101	7673	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0102	7511	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0103	7673	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0104	7673	1	0	0	1	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0105	7672	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0106	7672	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0107	7672	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0108	7672	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0109	7693	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	c0110	7673	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAP70_chr2_97708576_97744860	1/1	c0001	1860	293	78	51	128	11	23	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0002	1860	41	8	18	1	5	9	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0003	1860	16	0	0	16	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0004	1860	4	4	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860