JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZAP70_chr2_97708576_97744860	0/0	c0005	1860	4	4	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0006	1860	2	2	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0007	1860	2	2	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0008	1860	1	1	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0009	1860	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0010	1860	1	0	1	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAR1L_chr13_32298699_32320363	1/1	c0001	966	264	61	48	107	10	36	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0002	966	137	14	25	84	6	8	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0003	966	63	14	13	28	2	6	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0004	966	6	6	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0005	966	1	0	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0006	966	1	0	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0007	966	1	1	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	c0008	966	1	0	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1_chr4_48485252_48499389	0/0	c0001	1275	184	44	29	81	4	26	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/1	c0002	1275	150	14	37	77	8	13	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0003	1275	15	3	4	2	2	4	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0004	1275	13	13	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0005	1275	8	8	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0006	1275	7	7	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	1/0	c0007	1275	7	5	1	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0008	1275	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0009	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0010	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0011	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0012	1275	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0013	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0014	1275	1	0	0	0	0	1	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0015	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0016	1275	1	0	0	1	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0017	1275	1	0	1	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0018	1275	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	c0019	1275	1	1	0	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZBBX_chr3_167234843_167385297	0/0	c0001	2520	78	18	16	32	3	9	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0002	2520	67	25	15	17	5	5	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0003	2520	51	2	14	17	5	13	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0004	2520	12	5	1	6	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0005	2520	12	0	3	9	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/1	c0006	2520	9	0	3	0	2	3	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0007	2520	7	7	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0008	2520	6	6	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0009	2520	6	6	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0010	2520	6	6	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0011	2520	6	4	2	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0012	2520	5	4	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0013	2520	4	0	4	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0014	2520	2	1	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297