JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRCA2_chr13_32310508_32405268	0/0	c0013	10257	4	0	4	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0014	10257	3	3	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0015	10257	3	0	0	3	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0016	10257	2	0	0	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0017	10257	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0018	10257	2	1	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0019	10257	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0020	10257	2	0	2	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0021	10257	2	1	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0022	10257	2	0	0	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0023	10257	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0024	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0025	10257	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0026	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0027	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0028	10257	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0029	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0030	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0031	10257	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0032	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0033	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0034	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0035	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0036	10257	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0037	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0038	10257	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0039	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0040	10257	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0041	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0042	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0043	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0044	10257	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0045	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0046	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0047	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0048	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0049	10257	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0050	10257	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	c0051	10257	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCC3_chrX_155066508_155128077	1/1	c0001	876	253	70	44	102	9	26	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	c0002	877	1	0	0	1	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRD1_chr22_49768283_49832873	1/1	c0001	3570	161	36	27	69	8	19	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0002	3570	34	10	1	19	0	4	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0003	3570	21	9	3	0	4	5	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0004	3570	12	8	1	2	0	1	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0005	3570	10	10	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0006	3570	5	3	0	0	0	2	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0007	3570	3	3	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0008	3570	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0009	3570	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873