JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBBX_chr3_167234843_167385297	0/0	c0015	2520	2	0	0	2	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0016	2520	2	2	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	1/0	c0017	2520	1	0	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0018	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0019	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0020	2520	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0021	2520	1	0	0	0	1	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0022	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0023	2520	1	0	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0024	2520	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0025	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0026	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0027	2520	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0028	2520	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0029	2520	1	0	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0030	2520	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	c0031	2520	1	0	0	1	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBED1_chrX_2481435_2505976	1/1	c0001	2085	162	41	36	65	8	10	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0002	2085	29	0	9	12	1	7	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0003	2085	10	10	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0004	2085	7	1	3	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0005	2085	3	0	0	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0006	2086	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0007	2108	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0008	2086	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0009	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0010	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0011	2086	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0012	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0013	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0014	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	c0015	2085	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED2_chr3_111587900_111600346	1/1	c0001	657	415	73	79	199	14	48	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0002	657	17	17	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0003	657	5	5	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0004	657	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0005	657	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0006	657	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0007	657	1	0	0	1	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	c0008	657	1	1	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED3_chr5_77067072_77092285	1/1	c0001	705	346	83	57	151	10	43	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	c0002	705	103	11	26	53	6	7	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	c0003	705	4	3	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	c0004	705	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	c0005	705	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	c0006	705	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED4_chr22_49848844_49895080	0/1	c0001	3516	142	18	25	82	4	12	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0002	3516	60	32	4	12	4	8	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0003	3516	20	11	0	8	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	1/0	c0004	3516	18	0	1	9	0	7	copy fasta	ZBED4	chr22	49848844	49895080