JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBED4_chr22_49848844_49895080	0/0	c0005	3516	13	9	3	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0006	3516	10	0	2	8	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0007	3516	8	0	0	8	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0008	3516	7	6	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0009	3516	4	0	0	3	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0010	3516	4	2	0	0	0	2	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0011	3516	3	0	0	0	0	3	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0012	3516	3	0	3	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0013	3516	2	0	0	2	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0014	3516	2	2	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0015	3516	2	2	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0016	3516	2	2	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0017	3516	2	0	0	1	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0018	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0019	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0020	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0021	3516	1	0	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0022	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0023	3516	1	0	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0024	3516	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0025	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0026	3516	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0027	3516	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0028	3516	1	0	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0029	3516	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0030	3516	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	c0031	3516	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED5_chr11_10847706_10863053	1/1	c0001	2082	365	53	63	192	15	40	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0002	2082	25	23	2	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0003	2082	8	1	1	3	0	3	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0004	2082	7	7	0	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0005	2082	7	1	4	0	1	1	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0006	2082	7	6	1	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0007	2082	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0008	2082	1	0	0	0	0	1	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0009	2082	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0010	2082	1	0	0	1	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0011	2082	1	0	0	0	0	1	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0012	2082	1	0	1	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	c0013	2082	1	1	0	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053
ZBED6_chr1_203790623_203859124	1/0	c0001	2940	102	30	13	47	4	7	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0002	2940	87	7	24	52	1	3	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0003	2940	81	17	28	16	6	14	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0004	2940	61	12	2	45	1	1	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/1	c0005	2940	27	15	5	0	2	4	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0006	2940	6	0	0	5	0	1	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0007	2940	5	5	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0008	2940	3	0	0	0	0	3	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0009	2940	2	0	0	2	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0010	2940	2	2	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124