JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBED6_chr1_203790623_203859124	0/0	c0011	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0012	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0013	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0014	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0015	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0016	2940	1	0	0	0	0	1	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0017	2940	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	c0018	2940	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBP1_chr20_57598852_57625426	0/0	c0001	1290	212	10	44	117	7	34	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/1	c0002	1290	111	47	24	26	7	6	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0003	1290	46	4	3	38	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0004	1290	20	0	0	18	0	2	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0005	1290	18	6	7	0	2	3	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0006	1290	6	6	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0007	1290	6	6	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0008	1290	4	2	1	0	1	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0009	1290	4	4	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0010	1290	4	0	2	1	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0011	1290	4	4	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0012	1290	3	3	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0013	1290	2	0	0	0	1	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0014	1290	2	2	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0015	1290	2	1	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0016	1290	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0017	1290	1	0	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0018	1290	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0019	1290	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0020	1290	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0021	1290	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	1/0	c0022	1290	1	0	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0023	1290	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0024	1290	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0025	1290	1	0	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0026	1290	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	c0027	1335	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBTB10_chr8_80481226_80531265	1/1	c0001	2616	238	88	43	74	7	24	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0002	2613	28	0	0	25	0	3	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0003	2616	9	0	0	9	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0004	2616	8	0	2	6	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0005	2616	2	0	1	0	1	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0006	2616	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0007	2616	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0008	2616	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0009	2616	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0010	2616	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0011	2616	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0012	2616	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0013	2616	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0014	2616	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	c0015	2616	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265