JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB10_chr8_80481226_80531265	0/0	c0016	2613	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB11_chr3_101643889_101682132	1/1	c0001	3162	368	67	59	191	14	35	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0002	3162	19	19	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0003	3162	11	0	4	7	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0004	3162	4	0	0	4	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0005	3162	4	4	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0006	3162	1	0	0	1	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0007	3162	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0008	3162	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0009	3162	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0010	3162	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0011	3162	1	0	0	0	0	1	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0012	3162	1	0	0	1	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	c0013	3162	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB12_chr6_31894613_31907086	0/1	c0001	1380	346	68	70	153	16	38	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0002	1380	28	14	7	0	1	6	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0003	1380	26	0	3	21	0	2	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0004	1380	4	4	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0005	1380	4	0	3	0	1	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0006	1380	4	3	1	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0007	1380	2	0	0	2	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0008	1380	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0009	1380	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0010	1380	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0011	1380	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	c0012	1380	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB14_chr18_5284022_5300726	0/1	c0001	1350	307	78	55	129	9	35	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	1/0	c0002	1350	70	6	16	33	7	7	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	c0003	1350	10	9	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	c0004	1350	3	3	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	c0005	1350	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	c0006	1350	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB16_chr11_114054711_114261765	1/1	c0001	2022	267	85	62	82	6	30	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0002	2022	4	4	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0003	2022	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0004	2022	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0005	2022	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0006	2022	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0007	2022	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0008	2022	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	c0009	2022	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB17_chr1_15936869_15981101	1/0	c0001	2412	145	45	25	60	1	13	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0002	2412	125	34	23	52	5	11	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/1	c0003	2412	42	5	18	0	8	10	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0004	2412	2	1	1	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0005	2412	1	1	0	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0006	2412	1	0	1	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0007	2412	1	0	0	1	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0008	2412	1	1	0	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	c0009	2412	1	0	0	1	0	0	copy fasta	ZBTB17	chr1	15936869	15981101