JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB17_chr1_15936869_15981101	0/0	c0010	2412	1	1	0	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB18_chr1_244046283_244062476	1/0	c0001	1596	401	89	81	177	17	36	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	c0002	1596	23	7	1	13	1	1	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	c0003	1596	2	2	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	c0004	1596	1	0	0	0	0	1	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	c0005	1596	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/1	c0006	1596	1	0	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	c0007	1596	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB1_chr14_64499770_64529951	1/1	c0001	2142	274	84	48	99	4	37	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0002	2142	73	4	10	43	6	10	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0003	2142	16	2	13	0	0	1	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0004	2142	4	2	2	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0005	2142	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0006	2142	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	c0007	2142	1	0	1	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB20_chr3_114309500_115152288	1/1	c0001	2226	83	55	18	0	0	8	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	c0002	2226	3	3	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	c0003	2226	2	2	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB21_chr21_41981831_42015360	0/0	c0001	3201	165	42	21	76	5	21	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	1/0	c0002	3201	125	21	25	61	7	10	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0003	3201	31	0	6	20	1	4	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0004	3198	21	10	9	0	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/1	c0005	3201	18	5	6	1	1	4	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0006	3201	5	5	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0007	3198	5	0	0	5	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0008	3201	4	0	2	0	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0009	3204	4	0	0	4	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0010	3201	3	3	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0011	3201	3	2	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0012	3201	2	2	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0013	3201	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0014	3201	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0015	3201	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0016	3201	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0017	3198	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0018	3201	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0019	3201	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0020	3201	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0021	3201	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0022	3201	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0023	3201	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	c0024	3201	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB22_chr6_33309418_33322744	0/1	c0001	1905	196	43	33	98	5	16	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0002	1905	187	51	35	71	5	25	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0003	1905	3	0	0	2	0	1	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0004	1905	3	0	0	3	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0005	1905	2	2	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0006	1905	1	0	0	1	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	c0007	1905	1	0	0	1	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB24_chr6_109457594_109488219	1/1	c0001	2094	366	53	64	194	15	38	copy fasta	ZBTB24	chr6	109457594	109488219