JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB34_chr9_126855639_126890878	0/0	c0004	1515	1	0	0	0	0	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	c0005	1515	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	c0006	1515	1	0	1	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB37_chr1_173863380_173908547	1/1	c0001	1512	306	52	47	161	11	33	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0002	1512	44	40	4	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0003	1512	36	2	8	15	6	5	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0004	1512	6	0	2	0	1	3	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0005	1512	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0006	1512	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0007	1512	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	c0008	1512	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB38_chr3_141363504_141454792	1/0	c0001	3588	176	55	31	57	8	24	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/1	c0002	3588	54	0	9	40	1	3	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0003	3588	15	4	2	8	1	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0004	3588	6	2	0	4	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0005	3588	4	3	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0006	3588	3	0	0	0	0	3	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0007	3588	3	3	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0008	3588	2	2	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0009	3588	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0010	3588	1	1	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0011	3588	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0012	3588	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0013	3588	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0014	3588	1	0	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	c0015	3588	1	0	0	1	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB39_chr12_56993836_57011546	1/1	c0001	2139	297	78	68	119	7	23	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0002	2139	5	1	2	0	2	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0003	2139	3	3	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0004	2139	2	0	0	2	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0005	2139	2	2	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0006	2139	1	0	0	0	1	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0007	2139	1	0	0	0	0	1	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0008	2139	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0010	2139	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0011	2139	1	1	0	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB39_chr12_56993836_57011546	0/0	c0012	2139	1	0	1	0	0	0	copy fasta	ZBTB39	chr12	56993836	57011546
ZBTB3_chr11_62745963_62759160	1/1	c0001	1575	302	57	64	134	16	29	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	c0002	1575	49	20	1	27	0	1	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	c0003	1575	19	16	3	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	c0004	1575	3	3	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	c0005	1575	2	2	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	c0006	1575	1	0	0	1	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB40_chr1_22446851_22536154	0/0	c0001	3720	155	44	37	58	3	13	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0002	3720	91	3	14	58	3	13	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/1	c0003	3720	49	10	13	16	2	7	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0004	3720	13	11	2	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0005	3720	11	0	0	11	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	c0006	3720	7	6	1	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154