JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB45_chr19_58508530_58524810	0/0	c0007	1536	2	0	2	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0008	1536	2	2	0	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0010	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0011	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0013	1536	1	0	0	0	0	1	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0015	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0016	1536	1	0	0	0	0	1	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	c0017	1536	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB46_chr20_63738670_63836264	1/0	c0001	1770	99	53	19	13	2	11	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0002	1770	78	5	28	36	3	6	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/1	c0003	1770	69	18	6	37	2	5	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0004	1770	19	0	2	11	2	4	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0005	1770	9	0	6	0	3	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0006	1770	8	3	1	1	0	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0007	1770	7	1	2	0	1	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0008	1770	4	3	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0009	1770	3	0	0	3	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0010	1770	3	0	0	0	0	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0011	1770	3	1	1	0	1	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0012	1770	2	0	0	0	0	2	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0013	1770	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0014	1770	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0015	1770	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0016	1770	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0017	1770	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0018	1770	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0019	1770	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0020	1770	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0021	1770	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0022	1770	1	0	0	0	0	1	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0023	1770	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	c0024	1770	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB47_chr3_42648697_42672580	1/1	c0001	2244	185	16	50	86	11	20	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0002	2244	108	31	15	50	3	9	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0003	2244	68	23	9	27	1	8	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0004	2244	7	7	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0005	2244	5	5	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0006	2244	4	4	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0007	2244	4	0	0	4	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0008	2244	3	2	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0009	2244	2	0	0	2	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0010	2244	1	0	1	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0011	2244	1	0	0	0	1	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0013	2244	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0014	2244	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0015	2244	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580