JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB47_chr3_42648697_42672580	0/0	c0016	2244	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0017	2244	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0018	2244	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	c0019	2244	1	0	0	0	0	1	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB48_chr1_6574994_6594280	1/1	c0001	2067	388	87	78	168	12	41	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0002	2067	10	0	3	0	2	5	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0003	2067	2	2	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0004	2067	2	0	0	2	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0005	2067	2	2	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0006	2067	1	0	1	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0007	2067	1	0	0	0	0	1	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0008	2067	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0009	2067	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0010	2067	1	0	0	0	0	1	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0011	2067	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0012	2067	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0013	2067	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0014	2067	1	0	0	1	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	c0015	2067	1	1	0	0	0	0	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB49_chr4_4285251_4326783	0/0	c0001	2298	133	49	30	33	7	14	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	1/1	c0002	2298	97	13	13	56	4	9	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0003	2298	71	7	15	43	3	3	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0004	2298	68	0	4	53	0	11	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0005	2298	11	9	2	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0006	2298	5	0	0	5	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0007	2298	4	4	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0008	2298	3	0	0	3	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0009	2298	3	0	3	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0010	2298	2	2	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0012	2298	1	0	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0013	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0014	2298	1	0	0	0	0	1	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0015	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0016	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0017	2298	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0018	2298	1	0	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0019	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0020	2298	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0021	2298	1	0	1	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0022	2298	1	1	0	0	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB49_chr4_4285251_4326783	0/0	c0023	2298	1	0	0	1	0	0	copy fasta	ZBTB49	chr4	4285251	4326783
ZBTB4_chr17_7454378_7484631	1/1	c0001	3042	221	51	32	97	7	32	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0002	3042	77	15	16	35	5	6	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0003	3042	54	9	21	21	0	3	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0004	3042	11	10	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0005	3042	8	0	0	8	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0006	3042	6	0	0	6	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0007	3042	5	4	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0008	3042	4	0	2	0	2	0	copy fasta	ZBTB4	chr17	7454378	7484631