JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRD1_chr22_49768283_49832873	0/0	c0010	3570	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0011	3570	1	0	0	0	0	1	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0012	3570	1	0	0	1	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0013	3570	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0014	3570	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0015	3570	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0016	3570	1	0	0	1	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0017	3570	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0018	3570	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	c0019	3570	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD2_chr6_32963594_32986501	0/0	c0001	2406	116	39	12	56	6	3	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0002	2406	106	12	23	55	5	11	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0003	2406	83	14	16	46	2	5	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0004	2406	43	0	8	26	1	8	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/1	c0005	2406	31	13	9	6	0	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0006	2406	25	3	7	8	3	4	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0007	2406	14	2	0	12	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0008	2403	8	0	2	1	0	5	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0009	2406	4	0	0	4	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0010	2406	4	0	0	2	0	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0011	2406	4	4	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0012	2407	4	2	0	2	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0013	2406	3	0	2	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0014	2406	2	0	2	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0015	2406	2	0	0	0	0	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0016	2406	2	0	0	2	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0017	2406	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0018	2403	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0019	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0020	2406	1	0	0	0	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0021	2406	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0022	2406	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0023	2406	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0024	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0025	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0026	2406	1	0	0	0	1	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0027	2406	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0028	2406	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0029	2407	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0030	2407	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0031	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0032	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0033	2406	1	0	0	1	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	c0034	2406	1	0	0	0	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD3OS_chr9_134020481_134036587	1/1	c0001	255	333	94	60	121	14	42	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	c0002	230	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3_chr9_134025305_134073026	0/0	c0001	2181	99	2	16	60	4	17	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0002	2181	92	57	17	7	5	6	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	1/1	c0003	2181	69	10	13	33	2	9	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0004	2181	23	1	8	9	1	4	copy fasta	BRD3	chr9	134025305	134073026