JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB4_chr17_7454378_7484631	0/0	c0009	3042	3	3	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0010	3042	2	0	0	0	0	2	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0011	3042	2	0	2	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0012	3042	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0013	3042	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0014	3042	1	0	0	0	0	1	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0015	3042	1	1	0	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0016	3042	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0017	3042	1	0	1	0	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB4_chr17_7454378_7484631	0/0	c0018	3042	1	0	0	1	0	0	copy fasta	ZBTB4	chr17	7454378	7484631
ZBTB5_chr9_37433102_37470450	0/1	c0001	2034	349	83	59	159	11	36	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0002	2034	18	1	9	1	1	6	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0003	2034	3	3	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0004	2034	2	0	0	2	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0005	2034	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0006	2034	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0007	2034	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0008	2034	1	0	0	1	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	1/0	c0009	2034	1	0	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0010	2034	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0011	2034	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB5_chr9_37433102_37470450	0/0	c0012	2034	1	1	0	0	0	0	copy fasta	ZBTB5	chr9	37433102	37470450
ZBTB6_chr9_122903056_122918323	1/1	c0001	1275	402	92	73	183	18	34	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	c0002	1275	1	0	0	1	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB6_chr9_122903056_122918323	0/0	c0003	1275	1	0	1	0	0	0	copy fasta	ZBTB6	chr9	122903056	122918323
ZBTB7A_chr19_4038303_4071899	1/1	c0001	1755	240	72	53	62	6	45	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0002	1755	13	4	0	9	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0003	1755	6	6	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0004	1755	4	4	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0005	1755	2	0	0	2	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0006	1755	2	2	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0007	1755	1	0	0	1	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0008	1755	1	0	1	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0009	1755	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0010	1755	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0011	1862	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0012	1755	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0013	1755	1	0	0	0	0	1	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0014	1752	1	1	0	0	0	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7A_chr19_4038303_4071899	0/0	c0015	1755	1	0	0	0	1	0	copy fasta	ZBTB7A	chr19	4038303	4071899
ZBTB7B_chr1_154997802_155023523	0/0	c0001	1620	227	42	47	109	8	21	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	1/1	c0002	1620	99	45	14	11	7	20	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0003	1620	14	3	4	4	1	2	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0004	1620	2	0	2	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0005	1620	1	0	1	0	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0006	1620	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0007	1620	1	0	0	0	0	1	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7B_chr1_154997802_155023523	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	ZBTB7B	chr1	154997802	155023523
ZBTB7C_chr18_48021672_48414383	1/1	c0001	1860	78	21	22	15	6	12	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0002	1860	50	36	3	7	1	3	copy fasta	ZBTB7C	chr18	48021672	48414383