JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZBTB7C_chr18_48021672_48414383	0/0	c0003	1860	14	4	6	2	1	1	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0004	1860	6	6	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0005	1860	4	0	0	4	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0006	1860	4	4	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0007	1860	3	2	1	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0008	1860	2	2	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0009	1851	2	0	0	2	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0011	1860	1	0	1	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0013	1860	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0014	1860	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0015	1860	1	0	0	1	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0016	1860	1	0	0	0	0	1	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0017	1860	1	0	1	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0018	1860	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0019	1860	1	1	0	0	0	0	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB7C_chr18_48021672_48414383	0/0	c0020	1860	1	0	0	0	0	1	copy fasta	ZBTB7C	chr18	48021672	48414383
ZBTB8A_chr1_32534427_32610941	1/1	c0001	1326	301	86	56	111	16	30	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8A_chr1_32534427_32610941	0/0	c0002	1326	1	0	0	1	0	0	copy fasta	ZBTB8A	chr1	32534427	32610941
ZBTB8B_chr1_32460072_32501686	1/1	c0001	1488	185	62	30	59	8	24	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0002	1488	3	3	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0003	1488	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0004	1488	2	2	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0005	1488	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0006	1488	1	0	0	1	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8B_chr1_32460072_32501686	0/0	c0008	1488	1	1	0	0	0	0	copy fasta	ZBTB8B	chr1	32460072	32501686
ZBTB8OS_chr1_32615820_32655550	1/1	c0001	504	214	36	41	85	16	34	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	c0002	504	100	44	23	31	0	2	copy fasta	ZBTB8OS	chr1	32615820	32655550
ZBTB9_chr6_33449576_33462544	0/0	c0001	1422	331	72	66	146	14	33	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0002	1422	20	19	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/1	c0003	1422	8	2	3	0	2	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0004	1422	7	2	3	1	0	1	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0005	1422	2	0	2	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0006	1422	1	0	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0007	1422	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0008	1422	1	0	0	1	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0009	1422	1	0	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0010	1422	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0011	1422	1	0	1	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	c0012	1422	1	1	0	0	0	0	copy fasta	ZBTB9	chr6	33449576	33462544
ZC2HC1A_chr8_78661089_78724765	0/0	c0001	978	162	41	40	55	9	17	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	1/0	c0002	978	87	37	13	24	6	6	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/1	c0003	978	8	5	1	0	1	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	c0004	978	3	1	1	0	0	1	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	c0005	978	1	0	1	0	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	c0006	978	1	0	0	1	0	0	copy fasta	ZC2HC1A	chr8	78661089	78724765
ZC2HC1B_chr6_143859474_143943343	1/1	c0001	669	315	72	54	143	6	38	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	c0002	669	11	11	0	0	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343