JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC2HC1B_chr6_143859474_143943343	0/0	c0003	669	3	3	0	0	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	c0004	669	1	0	0	1	0	0	copy fasta	ZC2HC1B	chr6	143859474	143943343
ZC2HC1C_chr14_75064641_75084988	1/0	c0001	1371	151	57	34	28	7	24	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/1	c0002	1371	126	2	25	80	5	13	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0003	1371	86	23	14	40	0	9	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0004	1372	7	0	0	7	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0005	1371	7	7	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0006	1371	3	0	0	3	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0007	1371	2	0	0	0	0	2	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0008	1371	2	0	0	2	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0009	1371	2	0	0	2	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0010	1371	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0011	1371	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0012	1371	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0013	1371	1	1	0	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0014	1371	1	0	1	0	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0016	1371	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	c0017	1371	1	0	0	1	0	0	copy fasta	ZC2HC1C	chr14	75064641	75084988
ZC3H10_chr12_56113266_56132514	1/1	c0001	1305	339	79	70	140	14	34	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	c0002	1305	7	7	0	0	0	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	c0003	1305	2	0	0	0	2	0	copy fasta	ZC3H10	chr12	56113266	56132514
ZC3H11A_chr1_203790623_203859124	0/1	c0001	2433	281	62	56	124	10	28	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0002	2433	75	10	13	42	4	6	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	1/0	c0003	2433	11	10	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0004	2433	5	5	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0005	2433	2	0	2	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0006	2433	2	2	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0007	2433	2	2	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0008	2433	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0009	2433	1	0	0	1	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0010	2433	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0011	2433	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0012	2433	1	0	1	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	c0013	2433	1	1	0	0	0	0	copy fasta	ZC3H11A	chr1	203790623	203859124
ZC3H11B_chr1_219603012_219618105	1/0	c0001	2418	200	21	52	100	8	18	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/1	c0002	2418	155	10	12	109	4	19	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0003	2418	36	27	5	0	2	2	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0004	2418	11	10	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0005	2418	9	9	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0006	2418	6	0	1	0	3	2	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0007	2418	6	6	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0008	2418	4	4	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0009	2418	4	4	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0010	2418	2	2	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0011	2418	2	0	0	2	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0012	2418	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0013	2418	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0014	2418	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0015	2418	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105