JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H11B_chr1_219603012_219618105	0/0	c0016	2418	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0017	2418	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0018	2418	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0019	2418	1	0	0	0	1	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0020	2418	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0021	2418	1	0	1	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0023	2418	1	0	0	0	0	1	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	c0024	2418	1	0	0	1	0	0	copy fasta	ZC3H11B	chr1	219603012	219618105
ZC3H11C_chr6_65296476_65311574	0/1	c0001	2418	324	54	61	151	14	43	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0002	2418	44	7	9	21	4	3	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0003	2418	16	14	2	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0004	2418	13	0	0	13	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0005	2418	6	0	0	6	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0006	2418	4	4	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0007	2418	4	4	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0008	2418	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0009	2418	3	3	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0010	2418	3	0	0	3	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0011	2418	2	2	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0012	2418	2	2	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0013	2418	2	0	0	2	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0014	2418	2	0	0	2	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0015	2418	2	0	0	0	0	2	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0016	2418	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0017	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0018	2418	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0019	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0020	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	1/0	c0021	2418	1	0	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0023	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0024	2418	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0025	2418	1	1	0	0	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0026	2418	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	c0027	2418	1	0	0	1	0	0	copy fasta	ZC3H11C	chr6	65296476	65311574
ZC3H12A_chr1_37469580_37489377	1/1	c0001	1800	373	82	58	176	14	41	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0002	1800	22	0	6	11	1	4	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0003	1800	10	0	10	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0004	1800	4	0	1	0	3	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0005	1800	3	3	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0006	1800	3	1	2	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0007	1800	3	3	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0008	1800	2	2	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0009	1800	2	0	0	2	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0010	1800	1	0	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0011	1800	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0012	1800	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0013	1800	1	0	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0014	1800	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377