JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H12A_chr1_37469580_37489377	0/0	c0015	1800	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0016	1800	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0017	1800	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0018	1800	1	0	0	0	0	1	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0019	1800	1	0	0	1	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0020	1800	1	0	1	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	c0021	1800	1	1	0	0	0	0	copy fasta	ZC3H12A	chr1	37469580	37489377
ZC3H12B_chrX_65029826_65512887	0/0	c0001	2511	160	50	27	63	5	15	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	c0002	2511	4	4	0	0	0	0	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12B_chrX_65029826_65512887	0/0	c0003	2512	1	0	0	0	0	1	copy fasta	ZC3H12B	chrX	65029826	65512887
ZC3H12C_chr11_110088392_110176841	1/1	c0001	2652	244	57	45	108	7	25	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0002	2652	86	15	15	42	7	7	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0003	2652	11	9	2	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0004	2652	5	4	0	0	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0005	2652	3	0	0	3	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0006	2652	3	3	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0007	2652	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0008	2652	2	2	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0009	2652	2	0	0	2	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0010	2652	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0011	2652	1	1	0	0	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0012	2652	1	0	0	0	0	1	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0013	2652	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0014	2652	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12C_chr11_110088392_110176841	0/0	c0015	2652	1	0	0	1	0	0	copy fasta	ZC3H12C	chr11	110088392	110176841
ZC3H12D_chr6_149441795_149490014	0/0	c0001	1584	157	10	25	103	2	17	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	1/0	c0002	1584	138	21	32	57	9	18	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/1	c0003	1584	42	20	12	1	2	6	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0004	1584	14	7	1	1	0	5	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0005	1584	7	7	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0006	1584	7	7	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0007	1584	6	6	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0008	1584	6	1	2	0	0	3	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0009	1584	5	0	4	0	1	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0010	1584	4	4	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0011	1584	3	0	0	3	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0012	1584	3	0	0	3	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0013	1584	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0014	1584	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0015	1584	2	0	0	2	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0016	1584	2	2	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0017	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0018	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0019	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0020	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0021	1584	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0022	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0023	1584	1	0	0	0	0	1	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0024	1584	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0025	1584	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014