JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H12D_chr6_149441795_149490014	0/0	c0026	1584	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0027	1584	1	1	0	0	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H12D_chr6_149441795_149490014	0/0	c0028	1584	1	0	0	1	0	0	copy fasta	ZC3H12D	chr6	149441795	149490014
ZC3H13_chr13_45949465_46057746	0/0	c0001	5010	214	42	36	114	5	17	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	1/0	c0002	5010	62	10	17	24	2	8	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0003	5010	15	0	3	9	1	2	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0004	5010	9	6	3	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0005	5010	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0006	5010	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0007	5010	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0008	5010	2	2	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0009	5010	2	0	2	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0010	5010	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0011	5010	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0012	5010	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0013	5010	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0014	5010	1	0	1	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0015	5010	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0016	5010	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0017	5010	1	0	0	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0018	5010	1	0	0	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0019	5010	1	1	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0020	5010	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0021	5010	1	0	0	1	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/1	c0022	5010	1	0	0	0	0	0	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H13_chr13_45949465_46057746	0/0	c0023	5010	1	0	0	0	0	1	copy fasta	ZC3H13	chr13	45949465	46057746
ZC3H14_chr14_88558037_88632596	1/1	c0001	2211	303	83	57	115	14	32	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0002	2211	5	4	1	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0003	2211	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0004	2211	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0005	2193	1	1	0	0	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0006	2211	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0007	2211	1	0	0	0	0	1	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	c0008	2211	1	0	0	1	0	0	copy fasta	ZC3H14	chr14	88558037	88632596
ZC3H15_chr2_186481260_186514361	1/1	c0001	1281	370	92	75	150	14	37	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	c0002	1281	3	3	0	0	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	c0003	1281	1	1	0	0	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	c0004	1281	1	0	1	0	0	0	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	c0005	1281	1	0	0	0	0	1	copy fasta	ZC3H15	chr2	186481260	186514361
ZC3H18_chr16_88565403_88636964	0/1	c0001	2862	299	71	63	123	10	31	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	1/0	c0002	2862	47	10	5	21	1	9	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0003	2862	4	0	0	4	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0004	2862	4	2	2	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0005	2862	3	3	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0006	2862	2	0	0	2	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0007	2862	2	0	0	0	0	2	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0008	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0009	2862	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0010	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0011	2862	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964