JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H18_chr16_88565403_88636964	0/0	c0012	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0013	2862	1	0	0	0	0	1	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0014	2862	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0015	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0016	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0017	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0018	2862	1	1	0	0	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0019	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0020	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0021	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0022	2862	1	0	0	1	0	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0023	2862	1	0	0	0	1	0	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H18_chr16_88565403_88636964	0/0	c0024	2862	1	0	0	0	0	1	copy fasta	ZC3H18	chr16	88565403	88636964
ZC3H3_chr8_143432659_143546447	1/0	c0001	2847	61	25	14	8	5	8	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0002	2847	53	0	3	39	3	8	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0003	2847	38	0	5	30	2	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/1	c0004	2847	38	2	11	17	0	7	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0005	2847	33	3	10	17	0	3	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0006	2847	19	3	5	6	2	3	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0007	2847	10	9	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0008	2847	7	7	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0009	2847	7	6	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0010	2847	6	0	0	6	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0011	2847	6	5	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0012	2847	6	0	0	5	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0013	2847	5	4	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0014	2847	4	3	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0015	2847	4	0	0	4	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0016	2847	4	1	1	1	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0017	2847	3	3	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0018	2847	3	3	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0019	2847	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0020	2847	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0021	2847	2	0	1	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0022	2847	2	0	2	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0023	2850	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0024	2847	2	0	1	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0025	2850	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0026	2847	2	2	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0027	2847	2	0	0	2	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0028	2847	1	0	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0029	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0030	2847	1	0	0	0	0	1	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0031	2850	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0032	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0033	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0034	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0035	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0036	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0037	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447