JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H3_chr8_143432659_143546447	0/0	c0038	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0039	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0040	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0041	2847	1	0	0	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0042	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0043	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0044	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0045	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0046	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0047	2847	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0048	2850	1	1	0	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0049	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0050	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0051	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0052	2847	1	0	1	0	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0053	2850	1	0	0	0	1	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H3_chr8_143432659_143546447	0/0	c0054	2847	1	0	0	1	0	0	copy fasta	ZC3H3	chr8	143432659	143546447
ZC3H4_chr19_47059187_47118776	1/0	c0001	3912	159	19	21	92	5	21	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/1	c0002	3912	71	1	22	32	2	13	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0003	3912	34	4	15	3	7	5	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0004	3912	24	22	2	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0005	3912	22	10	3	5	0	4	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0006	3912	4	4	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0007	3912	4	4	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0008	3912	3	0	0	3	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0009	3912	3	3	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0010	3912	3	3	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0011	3912	2	0	2	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0012	3912	2	0	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0013	3912	2	0	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0014	3912	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0015	3912	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0016	3912	2	0	0	2	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0017	3912	2	2	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0018	3912	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0019	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0020	3912	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0021	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0022	3912	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0023	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0024	3912	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0025	3912	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0026	3912	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0027	3912	1	0	0	0	0	1	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0028	3912	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0029	3912	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0030	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0031	3912	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0032	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0033	3912	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776