JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H4_chr19_47059187_47118776	0/0	c0034	3912	1	0	0	1	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0035	3912	1	1	0	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	c0036	3912	1	0	1	0	0	0	copy fasta	ZC3H4	chr19	47059187	47118776
ZC3H6_chr2_112270597_112345059	0/0	c0001	3570	190	62	36	73	5	14	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	1/1	c0002	3570	74	3	15	41	3	10	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0003	3570	6	0	2	4	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0004	3570	2	2	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0005	3570	2	0	0	0	0	2	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0006	3570	2	2	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0007	3570	2	0	0	2	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0008	3570	2	0	2	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0009	3570	2	0	0	2	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0010	3570	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0011	3570	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0012	3570	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0013	3570	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0014	3570	1	1	0	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	c0015	3570	1	0	1	0	0	0	copy fasta	ZC3H6	chr2	112270597	112345059
ZC3H7A_chr16_11745597_11802258	0/0	c0001	2916	193	39	42	93	7	12	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	1/1	c0002	2916	171	23	28	83	9	26	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0003	2916	8	2	3	0	2	1	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0004	2916	5	0	0	5	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0005	2916	3	1	0	0	0	2	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0006	2916	2	0	2	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0007	2916	1	1	0	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0008	2916	1	1	0	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0009	2916	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0010	2916	1	0	0	0	0	1	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0011	2916	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0012	2916	1	0	1	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0013	2916	1	0	0	1	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	c0014	2916	1	1	0	0	0	0	copy fasta	ZC3H7A	chr16	11745597	11802258
ZC3H7B_chr22_41296525_41365147	1/0	c0001	2934	235	60	27	122	8	17	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0002	2934	63	5	27	19	3	9	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0003	2934	11	9	2	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0004	2934	3	1	1	0	1	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0005	2934	3	3	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0006	2934	2	2	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0007	2934	1	0	1	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0008	2934	1	0	0	0	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0009	2934	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0010	2934	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0011	2934	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0012	2934	1	0	0	1	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0013	2934	1	1	0	0	0	0	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	c0014	2934	1	0	0	0	0	1	copy fasta	ZC3H7B	chr22	41296525	41365147
ZC3H8_chr2_112206529_112260042	1/1	c0001	876	307	73	61	129	12	30	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	c0002	876	5	4	1	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	c0003	876	2	2	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	c0004	876	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042