JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3H8_chr2_112206529_112260042	0/0	c0005	876	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	c0006	876	1	0	0	1	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	c0007	876	1	1	0	0	0	0	copy fasta	ZC3H8	chr2	112206529	112260042
ZC3HAV1L_chr7_139020706_139041042	1/1	c0001	903	381	77	61	197	10	34	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0002	903	13	5	3	0	3	2	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0003	903	10	10	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0004	903	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0005	903	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0006	903	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0007	903	1	0	0	0	1	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0008	892	1	0	0	1	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	c0009	903	1	1	0	0	0	0	copy fasta	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1_chr7_139038515_139114720	1/1	c0001	2709	84	10	22	41	3	6	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0002	2709	79	30	10	21	4	14	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0003	2709	36	2	10	24	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0004	2709	18	4	0	13	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0005	2709	17	3	2	10	1	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0006	2709	12	1	2	9	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0007	2709	11	11	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0008	2709	8	1	0	4	0	3	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0009	2709	5	4	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0010	2709	4	4	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0011	2709	3	0	1	1	0	1	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0012	2709	3	2	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0013	2709	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0014	2709	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0015	2709	3	0	0	3	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0016	2709	2	2	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0017	2709	2	0	0	0	0	2	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0018	2709	1	0	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0019	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0020	2728	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0021	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0022	2709	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0023	2709	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0024	2709	1	0	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0025	2709	1	0	0	0	1	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0026	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0027	2709	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0028	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0029	2709	1	0	0	1	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0030	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0031	2709	1	0	1	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0032	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0033	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0034	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0035	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0036	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0037	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720
ZC3HAV1_chr7_139038515_139114720	0/0	c0038	2709	1	1	0	0	0	0	copy fasta	ZC3HAV1	chr7	139038515	139114720