JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRD3_chr9_134025305_134073026	0/0	c0005	2181	17	14	3	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0006	2181	9	0	0	9	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0007	2181	5	0	4	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0008	2181	3	0	2	0	1	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0009	2181	3	0	1	2	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0010	2181	2	1	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0011	2181	2	0	2	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0012	2181	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0013	2181	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0014	2181	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0015	2181	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0016	2181	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0017	2181	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0018	2181	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0019	2181	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0020	2181	1	0	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	c0021	2181	1	0	0	0	1	0	copy fasta	BRD3	chr9	134025305	134073026
BRD4_chr19_15230519_15337539	1/1	c0001	4089	117	31	25	36	3	20	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0002	4089	25	8	3	7	2	5	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0003	4090	8	4	3	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0004	4089	8	7	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0005	4090	6	0	3	0	1	2	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0006	4090	5	2	2	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0007	4091	3	1	1	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0008	4089	3	3	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0009	4089	2	0	0	2	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0010	4089	2	2	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0011	4090	2	1	0	0	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0012	4089	2	0	0	2	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0013	4089	2	0	2	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0014	4091	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0015	4089	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0016	4089	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0017	4089	1	0	0	0	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0018	4090	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0019	4091	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0020	4091	1	0	0	0	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0021	4090	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0022	4090	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0023	4090	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0024	4089	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0025	4089	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0026	4090	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0027	4104	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0028	4089	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0029	4090	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0030	4089	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0031	4090	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0032	4089	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	c0033	4112	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539