JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZC3HC1_chr7_130013292_130056374	1/0	c0001	1509	174	71	32	48	4	18	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0002	1509	91	8	17	55	1	10	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/1	c0003	1509	33	3	17	3	5	4	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0004	1509	4	0	0	4	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0005	1509	4	4	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0006	1509	3	0	2	0	1	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0007	1509	2	1	1	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0008	1509	1	1	0	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0009	1509	1	0	0	1	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0010	1509	1	0	0	0	1	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0011	1509	1	0	1	0	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC3HC1_chr7_130013292_130056374	0/0	c0012	1509	1	0	0	1	0	0	copy fasta	ZC3HC1	chr7	130013292	130056374
ZC4H2_chrX_64910807_64981450	1/1	c0001	675	189	45	37	82	7	16	copy fasta	ZC4H2	chrX	64910807	64981450
ZC4H2_chrX_64910807_64981450	0/0	c0002	675	19	17	2	0	0	0	copy fasta	ZC4H2	chrX	64910807	64981450
ZCCHC10_chr5_132991985_133031549	1/1	c0001	579	308	94	49	123	6	34	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	c0002	579	2	1	1	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	c0003	579	1	0	0	1	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC10_chr5_132991985_133031549	0/0	c0004	579	1	1	0	0	0	0	copy fasta	ZCCHC10	chr5	132991985	133031549
ZCCHC12_chrX_118818824_118831968	1/1	c0001	1209	298	59	53	145	11	28	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	c0002	1209	12	11	1	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	c0003	1209	5	2	3	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	c0004	1208	1	0	0	1	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	c0005	1209	1	1	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC12_chrX_118818824_118831968	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	ZCCHC12	chrX	118818824	118831968
ZCCHC13_chrX_74299180_74310034	1/1	c0001	501	233	60	46	91	5	29	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0002	501	8	8	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0003	501	7	0	4	2	0	1	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0004	501	2	2	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0005	501	2	1	1	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0006	500	1	0	0	1	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC13_chrX_74299180_74310034	0/0	c0007	499	1	1	0	0	0	0	copy fasta	ZCCHC13	chrX	74299180	74310034
ZCCHC14_chr16_87401248_87498024	0/0	c0001	3261	76	11	11	48	3	3	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/1	c0002	3261	69	1	16	25	4	22	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0003	3261	26	2	5	19	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0004	3261	22	20	2	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0005	3261	17	16	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0006	3261	16	2	11	0	0	3	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0007	3261	13	1	1	10	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	1/0	c0008	3261	12	4	3	3	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0009	3261	7	0	1	2	0	4	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0010	3261	6	5	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0011	3261	6	3	2	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0012	3261	5	5	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0013	3261	5	4	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0014	3261	5	5	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0015	3261	5	0	0	5	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0016	3261	5	0	0	5	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0017	3261	5	0	4	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0018	3261	4	0	0	4	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0019	3261	3	3	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024