JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZCCHC14_chr16_87401248_87498024	0/0	c0020	3261	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0021	3261	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0022	3261	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0023	3261	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0024	3261	2	2	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0025	3261	2	0	0	2	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0026	3261	2	0	0	0	1	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0027	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0028	3261	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0029	3261	1	0	1	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0030	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0031	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0032	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0033	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0034	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0035	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0036	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0037	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0038	3261	1	1	0	0	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0039	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0040	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0041	3261	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0042	3261	1	0	0	1	0	0	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC14_chr16_87401248_87498024	0/0	c0043	3261	1	0	0	0	0	1	copy fasta	ZCCHC14	chr16	87401248	87498024
ZCCHC17_chr1_31292032_31369936	1/1	c0001	726	347	81	60	160	10	34	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	c0002	726	1	1	0	0	0	0	copy fasta	ZCCHC17	chr1	31292032	31369936
ZCCHC18_chrX_104107523_104120842	0/1	c0001	1212	285	48	49	145	11	31	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	1/0	c0002	1212	15	13	1	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0003	1212	13	12	1	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0004	1212	4	0	1	0	2	1	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0005	1212	1	0	0	0	0	1	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0006	1212	1	0	0	1	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0007	1212	1	0	0	1	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	c0008	1211	1	1	0	0	0	0	copy fasta	ZCCHC18	chrX	104107523	104120842
ZCCHC24_chr10_79377325_79450624	1/1	c0001	726	361	74	65	162	14	44	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0002	726	8	7	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0003	726	2	1	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0004	726	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0005	726	2	0	0	2	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0006	726	2	2	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0007	726	1	0	0	0	0	1	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0008	726	1	0	0	1	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0009	726	1	0	1	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0010	726	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	c0011	726	1	1	0	0	0	0	copy fasta	ZCCHC24	chr10	79377325	79450624
ZCCHC2_chr18_62518025_62583579	0/0	c0001	3540	90	12	13	53	3	9	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0002	3537	61	6	8	36	3	8	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0003	3540	26	15	1	3	3	4	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0004	3540	20	0	14	0	0	6	copy fasta	ZCCHC2	chr18	62518025	62583579
ZCCHC2_chr18_62518025_62583579	0/0	c0005	3537	18	3	5	7	0	3	copy fasta	ZCCHC2	chr18	62518025	62583579