JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZCCHC3_chr20_292570_305321	0/0	c0009	1212	1	0	0	1	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0010	1212	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC3_chr20_292570_305321	0/0	c0011	1212	1	1	0	0	0	0	copy fasta	ZCCHC3	chr20	292570	305321
ZCCHC4_chr4_25307774_25375383	0/1	c0001	1542	366	73	70	171	11	40	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	1/0	c0002	1542	61	2	5	46	1	6	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0003	1542	12	11	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0004	1542	7	7	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0005	1542	6	0	6	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0006	1542	2	1	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0007	1542	1	0	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0008	1542	1	0	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0009	1542	1	0	1	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0010	1542	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0011	1542	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0012	1542	1	0	0	1	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0013	1542	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	c0014	1542	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC7_chr9_37115574_37363149	1/1	c0001	1632	257	57	51	104	10	33	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0002	1632	19	17	1	0	0	1	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0003	1632	2	0	0	0	0	2	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0004	1632	1	1	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0005	1632	1	0	0	1	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	c0007	1632	1	0	0	1	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC8_chr12_122466600_122505932	1/1	c0001	2124	356	71	74	151	18	40	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0002	2124	3	2	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0003	2124	3	3	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0004	2124	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0005	2124	1	0	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0006	2124	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0007	2124	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0008	2124	1	0	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	c0009	2124	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC9_chr5_81296587_81318297	1/0	c0001	816	291	68	40	141	10	31	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	c0002	816	50	12	17	4	5	12	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/1	c0003	816	17	7	5	0	3	1	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	c0004	816	2	2	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	c0005	816	1	1	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	c0006	816	1	0	0	1	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCRB1_chr12_42307086_42331094	1/1	c0001	654	388	83	74	177	12	40	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	c0002	654	6	6	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	c0003	654	1	1	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	c0004	654	1	0	0	0	0	1	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	c0005	654	1	0	0	0	0	1	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	c0006	654	1	0	0	1	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCWPW1_chr7_100395872_100433703	1/1	c0001	1950	266	68	45	102	9	40	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0002	1950	16	0	4	4	4	4	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0003	1950	13	13	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0004	1950	5	0	0	5	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	c0005	1950	4	1	2	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703