JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDHHC11B_chr5_705355_789729	0/0	c0047	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0048	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0049	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0050	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0051	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0052	1116	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0053	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0054	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0055	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0056	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0057	1116	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0058	1116	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0059	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0060	1116	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0061	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0062	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0063	1116	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	c0064	1116	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11_chr5_790605_855986	1/1	c0001	1239	144	16	33	66	13	14	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0002	1239	62	17	17	22	1	5	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0003	1239	41	10	1	29	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0004	1239	14	0	1	12	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0005	1239	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0006	1239	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0007	1239	5	4	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0008	1239	5	5	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0009	1239	4	4	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0010	1239	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0011	1239	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0012	1239	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0014	1239	1	0	0	0	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0016	1239	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0017	1239	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0018	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0019	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0020	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0021	1239	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0022	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0023	1239	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0024	1239	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0025	1239	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0026	1239	1	0	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0027	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0028	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	c0029	1239	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC12_chr9_128715873_128729127	0/1	c0001	804	314	72	65	126	12	38	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0002	804	18	2	6	5	0	5	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0003	804	8	8	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127