JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDHHC12_chr9_128715873_128729127	0/0	c0004	804	7	4	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0005	804	3	0	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0006	804	3	0	0	3	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0007	804	2	1	1	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	1/0	c0008	804	2	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0009	804	1	0	1	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0010	804	1	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0011	804	1	0	1	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0012	804	1	0	0	0	0	1	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	c0013	804	1	1	0	0	0	0	copy fasta	ZDHHC12	chr9	128715873	128729127
ZDHHC13_chr11_19112168_19181415	0/1	c0001	1869	193	21	33	108	11	19	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	1/0	c0002	1869	147	59	22	51	1	13	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0003	1869	4	0	0	4	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0004	1522	1	0	0	1	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0005	1869	1	1	0	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0006	1869	1	1	0	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0007	1869	1	0	1	0	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0008	1869	1	0	0	1	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC13_chr11_19112168_19181415	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	ZDHHC13	chr11	19112168	19181415
ZDHHC14_chr6_157376190_157683157	1/1	c0001	1467	112	36	19	31	4	20	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0002	1467	60	14	13	17	4	12	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0003	1467	9	9	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0004	1467	2	2	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0005	1467	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0006	1467	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0007	1467	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC14_chr6_157376190_157683157	0/0	c0009	1467	1	1	0	0	0	0	copy fasta	ZDHHC14	chr6	157376190	157683157
ZDHHC15_chrX_75363427_75528037	1/1	c0001	1014	236	74	41	82	5	32	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	c0002	1014	1	0	1	0	0	0	copy fasta	ZDHHC15	chrX	75363427	75528037
ZDHHC16_chr10_97441175_97462370	1/1	c0001	1134	418	91	77	191	12	45	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	c0002	1134	1	0	1	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	c0003	1134	1	0	0	0	0	1	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	c0004	1134	1	1	0	0	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	ZDHHC16	chr10	97441175	97462370
ZDHHC17_chr12_76759115_76858696	1/0	c0001	1899	270	81	46	107	9	26	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0002	1899	20	5	5	7	2	1	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/1	c0003	1899	19	0	11	0	3	4	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0004	1899	3	0	3	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0005	1899	1	0	1	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0006	1899	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0007	1899	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0008	1899	1	1	0	0	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0009	1899	1	0	0	1	0	0	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	c0010	1899	1	0	0	0	0	1	copy fasta	ZDHHC17	chr12	76759115	76858696
ZDHHC18_chr1_26821688_26862604	1/1	c0001	1167	253	80	67	48	16	40	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	c0002	1167	5	5	0	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	c0003	1167	2	1	0	1	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	c0004	1167	1	0	0	1	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	c0005	1167	1	0	1	0	0	0	copy fasta	ZDHHC18	chr1	26821688	26862604