JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDHHC19_chr3_196192452_196216400	1/1	c0001	930	211	53	47	70	11	28	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0002	930	116	2	22	78	3	11	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0003	930	47	23	12	7	2	3	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0004	930	30	0	0	30	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0005	930	8	8	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0006	930	7	6	1	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0007	930	5	0	0	3	0	2	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0008	930	5	0	0	2	0	3	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0009	930	3	0	0	2	0	1	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0010	930	2	1	1	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0011	930	2	2	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0012	930	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0013	930	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0014	930	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0015	930	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0016	930	1	0	1	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC19_chr3_196192452_196216400	0/0	c0017	930	1	1	0	0	0	0	copy fasta	ZDHHC19	chr3	196192452	196216400
ZDHHC1_chr16_67389152_67421477	1/1	c0001	1449	170	60	39	33	7	29	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0002	1449	22	18	1	0	0	3	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0003	1449	3	3	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0004	1449	2	2	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0005	1449	1	0	0	1	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0006	1449	1	0	0	0	1	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC1_chr16_67389152_67421477	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	ZDHHC1	chr16	67389152	67421477
ZDHHC20_chr13_21367571_21464303	1/1	c0001	1098	292	92	66	84	14	34	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0002	1098	3	0	0	3	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0003	1098	2	2	0	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0004	1098	1	0	0	1	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0005	1098	1	0	0	0	0	1	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0006	1098	1	0	0	0	0	1	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0007	1098	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC20_chr13_21367571_21464303	0/0	c0008	1098	1	0	1	0	0	0	copy fasta	ZDHHC20	chr13	21367571	21464303
ZDHHC21_chr9_14606071_14698432	1/0	c0001	798	371	82	56	179	14	39	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/1	c0002	798	30	3	18	5	2	1	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	c0003	798	11	11	0	0	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	c0004	798	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC21_chr9_14606071_14698432	0/0	c0005	798	1	0	0	1	0	0	copy fasta	ZDHHC21	chr9	14606071	14698432
ZDHHC22_chr14_77126270_77146791	1/1	c0001	792	438	83	80	205	18	50	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	c0002	792	15	15	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	c0003	792	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC23_chr3_113943013_113968373	0/0	c0001	1308	272	55	49	132	13	23	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	1/1	c0002	1308	164	32	33	72	5	20	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0003	1308	5	5	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0004	1308	5	5	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0005	1308	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0006	1308	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0007	1308	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	c0008	1308	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC24_chr11_66530626_66551048	1/1	c0001	855	294	78	47	122	13	32	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	c0002	855	113	17	17	66	3	10	copy fasta	ZDHHC24	chr11	66530626	66551048