JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZDHHC24_chr11_66530626_66551048	0/0	c0003	855	1	0	0	0	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	c0004	855	1	0	0	0	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	c0005	855	1	1	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC2_chr8_17151482_17229799	1/1	c0001	1104	384	86	65	178	12	41	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	c0002	1104	3	0	3	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	c0003	1104	1	0	0	0	0	1	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	c0004	1104	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	c0005	1104	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC3_chr3_44910261_44981174	1/1	c0001	900	294	90	65	91	12	34	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	c0002	900	11	0	0	11	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	c0003	900	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC4_chr7_6572454_6594374	1/0	c0001	1035	279	53	47	131	12	35	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/1	c0002	1035	121	33	33	41	4	9	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0003	1035	2	2	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0004	1035	2	0	0	2	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0005	1035	1	0	0	1	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0006	1035	1	1	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	c0008	1035	1	0	0	1	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC5_chr11_57663114_57706182	0/1	c0001	2148	202	46	43	76	9	27	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	1/0	c0002	2148	105	36	28	22	7	11	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0003	2148	6	0	0	6	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0004	2148	2	0	0	2	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0005	2148	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0006	2148	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0007	2148	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0008	2148	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0009	2148	1	0	1	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0010	2148	1	0	0	0	0	1	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0011	2148	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0012	2148	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	c0013	2148	1	0	0	0	0	1	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC6_chr10_112425300_112451914	1/1	c0001	1242	208	53	34	98	4	17	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0002	1242	188	36	31	85	8	28	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0003	1242	6	4	2	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0004	1242	4	0	3	0	0	1	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0005	1242	2	2	0	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0006	1242	1	0	0	1	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	c0007	1242	1	1	0	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC7_chr16_84969175_85016535	0/1	c0001	927	227	76	34	86	7	23	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	1/0	c0002	927	92	4	12	53	7	15	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	c0003	927	55	1	23	21	4	6	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	c0004	927	15	13	2	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	c0005	927	1	0	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC8_chr22_20126804_20153007	1/0	c0001	2298	335	80	45	160	14	35	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0002	2298	22	0	2	18	0	2	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/1	c0003	2298	20	0	8	0	2	9	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0004	2298	9	9	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0005	2298	5	3	2	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	c0006	2298	3	2	1	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007